fMRI data preprocessing

import nibabel
from nilearn import plotting
import matplotlib
import numpy as np
import warnings
warnings.filterwarnings('ignore')

anat = nibabel.load('/data/ds000114/derivatives/fmriprep/sub-01/anat/sub-01_t1w_preproc.nii.gz')
fmri = nibabel.load('/data/ds000114/sub-01/ses-test/func/sub-01_ses-test_task-fingerfootlips_bold.nii.gz')

---------------------------------------------------------------------------
FileNotFoundError                         Traceback (most recent call last)
File ~\AppData\Roaming\Python\Python310\site-packages\nibabel\loadsave.py:101, in load(filename, **kwargs)
    100 try:
--> 101     stat_result = os.stat(filename)
    102 except OSError:

FileNotFoundError: [WinError 3] Системе не удается найти указанный путь: '/data/ds000114/derivatives/fmriprep/sub-01/anat/sub-01_t1w_preproc.nii.gz'

During handling of the above exception, another exception occurred:

FileNotFoundError                         Traceback (most recent call last)
Cell In[1], line 8
      5 import warnings
      6 warnings.filterwarnings('ignore')
----> 8 anat = nibabel.load('/data/ds000114/derivatives/fmriprep/sub-01/anat/sub-01_t1w_preproc.nii.gz')
      9 fmri = nibabel.load('/data/ds000114/sub-01/ses-test/func/sub-01_ses-test_task-fingerfootlips_bold.nii.gz')

File ~\AppData\Roaming\Python\Python310\site-packages\nibabel\loadsave.py:103, in load(filename, **kwargs)
    101     stat_result = os.stat(filename)
    102 except OSError:
--> 103     raise FileNotFoundError(f"No such file or no access: '{filename}'")
    104 if stat_result.st_size <= 0:
    105     raise ImageFileError(f"Empty file: '{filename}'")

FileNotFoundError: No such file or no access: '/data/ds000114/derivatives/fmriprep/sub-01/anat/sub-01_t1w_preproc.nii.gz'

Preprocessing

In this workflow we will conduct the following steps:

1. Coregistration of functional images to anatomical images (according to FSL’s FEAT pipeline)

Co-registrationis the process of spatial alignment of 2 images. The target image is also called reference volume. The goodness of alignment is evaluated with a cost function.

We have to move the fmri series from fmri native space:

plotting.view_img(nibabel.nifti1.Nifti1Image(fmri.get_fdata()[:,:,:,1], affine=fmri.affine), 
                  bg_img=anat, threshold=0.1e3, cut_coords=(0,0,0), title='Anat and fmri misalignment')

To native anatomical space:

2. Motion correction of functional images with FSL’s MCFLIRT

The images are aligned with rigid transformation - rotations, translations, reflections. Then spatial interpolation is done, so as there was no movements.

3. Slice Timing correction

The brain slices are not acquired at the same time. Therefore, interpolation is done between the nearest timepoints

Slice timing corretion in python

4. Smoothing of coregistered functional images with FWHM set to 5/10 mm

5. Artifact Detection in functional images (to detect outlier volumes)

So, let’s start!

Imports

First, let’s import all the modules we later will be needing.

from nilearn import plotting
%matplotlib inline
from os.path import join as opj
import os
import json
from nipype.interfaces.fsl import (BET, ExtractROI, FAST, FLIRT, ImageMaths,
                                   MCFLIRT, SliceTimer, Threshold)
from nipype.interfaces.spm import Smooth
from nipype.interfaces.utility import IdentityInterface
from nipype.interfaces.io import SelectFiles, DataSink
from nipype.algorithms.rapidart import ArtifactDetect
from nipype import Workflow, Node

Experiment parameters

It’s always a good idea to specify all parameters that might change between experiments at the beginning of your script. We will use one functional image for fingerfootlips task for ten subjects.

experiment_dir = '/output'
#output_dir = '/home/neuro/nipype_tutorial/notebooks'
output_dir = 'datasink'
working_dir = 'workingdir'

# list of subject identifiers
subject_list = ['01', '02', '03', '04', '05', '06', '07', '08', '09', '10']
# list of session identifiers
task_list = ['fingerfootlips']

# Smoothing widths to apply
fwhm = [5, 10]

# TR of functional images(time from the application of an excitation pulse to the application of the next pulse)
with open('/data/ds000114/task-fingerfootlips_bold.json', 'rt') as fp:
    task_info = json.load(fp)
TR = task_info['RepetitionTime']

# Isometric resample of functional images to voxel size (in mm)
iso_size = 4

Specify Nodes for the main workflow

Initiate all the different interfaces (represented as nodes) that you want to use in your workflow.

# ExtractROI - skip dummy scans
#t_min - Minimum index for t-dimension
#t_size - Size of ROI in t-dimension
extract = Node(ExtractROI(t_min=4, t_size=-1, output_type='NIFTI'),
               name="extract")

#MCFLIRT - motion correction
#https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/MCFLIRT
# http://www0.cs.ucl.ac.uk/staff/i.drobnjak/chapter6.pdf
#mean_vol- volumes are averaged to create a new template
#normcorr cost - https://www.fmrib.ox.ac.uk/datasets/techrep/tr02mj1/tr02mj1/node4.html
#https://onlinelibrary.wiley.com/reader/content/15ee5e5c909/10.1002/hbm.20235/format/pdf/OEBPS/pages/bg2.png
#sinc interpolation - https://math.stackexchange.com/questions/1372632/how-does-sinc-interpolation-work
mcflirt = Node(MCFLIRT(mean_vol=True,
                       save_plots=True,
                       output_type='NIFTI'),
               name="mcflirt")

#SliceTimer - correct for slice wise acquisition
#https://poc.vl-e.nl/distribution/manual/fsl-3.2/slicetimer/index.html
#more on https://matthew-brett.github.io/teaching/slice_timing.html
#interleaved = -odd
#top to bottom = --down
#normcorr loss
slicetimer = Node(SliceTimer(index_dir=False,
                             interleaved=True,
                             output_type='NIFTI',
                             time_repetition=TR),
                  name="slicetimer")

#Smooth - image smoothing
#spm_smooth for 3D Gaussian smoothing
#fwhm -full width at half maximum
smooth = Node(Smooth(), name="smooth")
smooth.iterables = ("fwhm", fwhm)

# Artifact Detection - determines outliers in functional images via intensity and motion paramters
# http://web.mit.edu/swg/art/art.pdf
#norm_threshold - Threshold to use to detect motion-related outliers when composite motion(translation + rotation) is being used
#zintensity_threshold - Intensity Z-threshold use to detection images that deviate from the mean (standart deviation)
#spm_global like calculation to determine the brain mask (brain mask is being built based on intensity)
#parameter_source - Source of movement parameters (take the motion parameters from FSL MCFLIRT (.par files))
#use_differences - Use differences between successive motion (first element) and
#intensity parameter (second element) estimates in order to determine outliers.

art = Node(ArtifactDetect(norm_threshold=2,
                          zintensity_threshold=3,
                          mask_type='spm_global',
                          parameter_source='FSL',
                          use_differences=[True, False],
                          plot_type='svg'),
           name="art")

Coregistration Workflow

Initiate a workflow that coregistrates the functional images to the anatomical image (according to FSL’s FEAT pipeline).

# BET - Skullstrip anatomical Image
#https://www.fmrib.ox.ac.uk/datasets/techrep/tr00ss2/tr00ss2.pdf
# https://andysbrainbook.readthedocs.io/en/latest/FreeSurfer/FS_ShortCourse/FS_13_PialSurface.html
bet_anat = Node(BET(frac=0.5,
                    robust=True,
                    output_type='NIFTI_GZ'),
                name="bet_anat")

# FAST - Image Segmentation
#https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FAST
#http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.200.3832&rep=rep1&type=pdf
segmentation = Node(FAST(output_type='NIFTI_GZ'),
                    name="segmentation", mem_gb=4)

# Select WM segmentation file from segmentation output
# Get better boundaries on white and gray matter
def get_wm(files):
    return files[-1]

# Threshold - Threshold WM probability image
threshold = Node(Threshold(thresh=0.5,
                           args='-bin',
                           output_type='NIFTI_GZ'),
                name="threshold")

# FLIRT - pre-alignment of functional images to anatomical images
#https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FLIRT
coreg_pre = Node(FLIRT(dof=6, output_type='NIFTI_GZ'),
                 name="coreg_pre")

# FLIRT - coregistration of functional images to anatomical images with BBR(uses the segmentation)
#https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FLIRT_BBR
# EPI - echo planar 
coreg_bbr = Node(FLIRT(dof=6,
                       cost='bbr',
                       schedule=opj(os.getenv('FSLDIR'),
                                    'etc/flirtsch/bbr.sch'),
                       output_type='NIFTI_GZ'),
                 name="coreg_bbr")

# Apply ccccddeckhbhcj to functional images
#apply_isoxfm-apply transformation supplied by in_matrix_file
applywarp = Node(FLIRT(interp='spline',
                       apply_isoxfm=iso_size,
                       output_type='NIFTI'),
                 name="applywarp")

# Apply coregistration wrap to mean file
applywarp_mean = Node(FLIRT(interp='spline',
                            apply_isoxfm=iso_size,
                            output_type='NIFTI_GZ'),
                 name="applywarp_mean")

# Create a coregistration workflow
coregwf = Workflow(name='coregwf')
coregwf.base_dir = opj(experiment_dir, working_dir)

# Connect all components of the coregistration workflow
coregwf.connect([(bet_anat, segmentation, [('out_file', 'in_files')]),
                 (segmentation, threshold, [(('partial_volume_files', get_wm),
                                             'in_file')]),
                 (bet_anat, coreg_pre, [('out_file', 'reference')]),
                 (threshold, coreg_bbr, [('out_file', 'wm_seg')]),
                 (coreg_pre, coreg_bbr, [('out_matrix_file', 'in_matrix_file')]),
                 (coreg_bbr, applywarp, [('out_matrix_file', 'in_matrix_file')]),
                 (bet_anat, applywarp, [('out_file', 'reference')]),
                 (coreg_bbr, applywarp_mean, [('out_matrix_file', 'in_matrix_file')]),
                 (bet_anat, applywarp_mean, [('out_file', 'reference')]),
                 ])

Specify input & output stream

Specify where the input data can be found & where and how to save the output data.

# Infosource - a function free node to iterate over the list of subject names
infosource = Node(IdentityInterface(fields=['subject_id', 'task_name']),
                  name="infosource")
infosource.iterables = [('subject_id', subject_list),
                        ('task_name', task_list)]

# SelectFiles - to grab the data 
anat_file = opj('derivatives', 'fmriprep', 'sub-{subject_id}', 'anat', 'sub-{subject_id}_t1w_preproc.nii.gz')
func_file = opj('sub-{subject_id}', 'ses-test', 'func',
                'sub-{subject_id}_ses-test_task-{task_name}_bold.nii.gz')

templates = {'anat': anat_file,
             'func': func_file}
selectfiles = Node(SelectFiles(templates,
                               base_directory='/data/ds000114'),
                   name="selectfiles")

# Datasink - creates output folder for important outputs
datasink = Node(DataSink(base_directory=experiment_dir,
                         container=output_dir),
                name="datasink")

## Use the following DataSink output substitutions
substitutions = [('_subject_id_', 'sub-'),
                 ('_task_name_', '/task-'),
                 ('_fwhm_', 'fwhm-'),
                 ('_roi', ''),
                 ('_mcf', ''),
                 ('_st', ''),
                 ('_flirt', ''),
                 ('.nii_mean_reg', '_mean'),
                 ('.nii.par', '.par'),
                 ]
subjFolders = [('fwhm-%s/' % f, 'fwhm-%s_' % f) for f in fwhm]
substitutions.extend(subjFolders)
datasink.inputs.substitutions = substitutions

Specify Workflow

Create a workflow and connect the interface nodes and the I/O stream to each other.

# Create a preprocessing workflow
preproc = Workflow(name='preproc')
preproc.base_dir = opj(experiment_dir, working_dir)

# Connect all components of the preprocessing workflow
preproc.connect([(infosource, selectfiles, [('subject_id', 'subject_id'),
                                            ('task_name', 'task_name')]),
                 (selectfiles, extract, [('func', 'in_file')]),
                 (extract, mcflirt, [('roi_file', 'in_file')]),
                 (mcflirt, slicetimer, [('out_file', 'in_file')]),

                 (selectfiles, coregwf, [('anat', 'bet_anat.in_file'),
                                         ('anat', 'coreg_bbr.reference')]),
                 (mcflirt, coregwf, [('mean_img', 'coreg_pre.in_file'),
                                     ('mean_img', 'coreg_bbr.in_file'),
                                     ('mean_img', 'applywarp_mean.in_file')]),
                 (slicetimer, coregwf, [('slice_time_corrected_file', 'applywarp.in_file')]),
                 
                 (coregwf, smooth, [('applywarp.out_file', 'in_files')]),

                 (mcflirt, datasink, [('par_file', 'preproc.@par')]),
                 (smooth, datasink, [('smoothed_files', 'preproc.@smooth')]),
                 (coregwf, datasink, [('applywarp_mean.out_file', 'preproc.@mean')]),

                 (coregwf, art, [('applywarp.out_file', 'realigned_files')]), # takes too much time
                 (mcflirt, art, [('par_file', 'realignment_parameters')]),

                 (coregwf, datasink, [('coreg_bbr.out_matrix_file', 'preproc.@mat_file'),
                                      ('bet_anat.out_file', 'preproc.@brain')]),
                 (art, datasink, [('outlier_files', 'preproc.@outlier_files'),
                                  ('plot_files', 'preproc.@plot_files')]),
                 ])

Visualize the workflow

It always helps to visualize your workflow.

# Create preproc output graph
preproc.write_graph(graph2use='colored', format='png', simple_form=True)

# Visualize the graph
from IPython.display import Image
Image(filename=opj(preproc.base_dir, 'preproc', 'graph.png'))

250814-16:51:08,19 nipype.workflow INFO:
	 Generated workflow graph: /output/workingdir/preproc/graph.png (graph2use=colored, simple_form=True).

# Visualize the detailed graph
preproc.write_graph(graph2use='flat', format='png', simple_form=True)
Image(filename=opj(preproc.base_dir, 'preproc', 'graph_detailed.png'))

230922-22:19:28,673 nipype.workflow INFO:
	 Generated workflow graph: /output/workingdir/preproc/graph.png (graph2use=flat, simple_form=True).

Run the Workflow

Now that everything is ready, we can run the preprocessing workflow. Change n_procs to the number of jobs/cores you want to use. Note that if you’re using a Docker container and FLIRT fails to run without any good reason, you might need to change memory settings in the Docker preferences (6 GB should be enough for this workflow).

!rm -r /output/workingdir

mkdir -p /output/datasink

‘MultiProc’ uses the Python multiprocessing library to distribute jobs. You can restrict the number of used resources (to say 4 CPUs), you can call:

#args_dict = {'n_procs' : -1}
# preproc.run(plugin='MultiProc', plugin_args={'n_procs' : 4})

Run with ‘Linear’ Plugin, for one process per subject, if multiprocessing failed. Read more: https://nipype.readthedocs.io/en/1.1.0/users/plugins.html

preproc.run(plugin='Linear')

250814-16:51:30,114 nipype.workflow INFO:
	 Workflow preproc settings: ['check', 'execution', 'logging', 'monitoring']
250814-16:51:30,596 nipype.workflow INFO:
	 Running serially.
250814-16:51:30,599 nipype.workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/selectfiles".
250814-16:51:30,659 nipype.workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
250814-16:51:30,754 nipype.workflow INFO:
	 [Node] Finished "preproc.selectfiles".
250814-16:51:30,757 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/bet_anat".
250814-16:51:30,912 nipype.workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-10/anat/sub-10_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/bet_anat/sub-10_t1w_preproc_brain.nii.gz -f 0.50 -R
250814-16:51:48,55 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
250814-16:51:48,57 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/segmentation".
250814-16:51:48,303 nipype.workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/segmentation/sub-10_t1w_preproc_brain.nii.gz
250814-16:54:38,10 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
250814-16:54:38,13 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/threshold".
250814-16:54:38,131 nipype.workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/segmentation/sub-10_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/threshold/sub-10_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-16:54:39,509 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
250814-16:54:39,511 nipype.workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/extract".
250814-16:54:39,668 nipype.workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-10/ses-test/func/sub-10_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/extract/sub-10_ses-test_task-fingerfootlips_bold_roi.nii 4 -1
250814-16:54:42,111 nipype.workflow INFO:
	 [Node] Finished "preproc.extract".
250814-16:54:42,113 nipype.workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/mcflirt".
250814-16:54:42,233 nipype.workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/extract/sub-10_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/mcflirt/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots
250814-16:55:43,687 nipype.workflow INFO:
	 [Node] Finished "preproc.mcflirt".
250814-16:55:43,689 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/coreg_pre".
250814-16:55:43,905 nipype.workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/mcflirt/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/bet_anat/sub-10_t1w_preproc_brain.nii.gz -out sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
250814-16:55:54,292 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
250814-16:55:54,294 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/coreg_bbr".
250814-16:55:54,690 nipype.workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/mcflirt/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-10/anat/sub-10_t1w_preproc.nii.gz -out sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/coreg_pre/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/threshold/sub-10_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-16:57:53,579 nipype.interface INFO:
	 stdout 2025-08-14T16:57:53.579580:Applying POWELL correction
250814-16:57:53,583 nipype.interface INFO:
	 stdout 2025-08-14T16:57:53.579580:finit, fend, fextrap = 0.707454 , 0.706856 , 0.706336
250814-16:57:55,268 nipype.interface INFO:
	 stdout 2025-08-14T16:57:55.267976:fval = 0.705507
250814-16:58:01,481 nipype.interface INFO:
	 stdout 2025-08-14T16:58:01.481575:Applying POWELL correction
250814-16:58:01,484 nipype.interface INFO:
	 stdout 2025-08-14T16:58:01.481575:finit, fend, fextrap = 0.704904 , 0.704489 , 0.704372
250814-16:58:01,768 nipype.interface INFO:
	 stdout 2025-08-14T16:58:01.768878:fval = 0.704486
250814-16:58:05,893 nipype.interface INFO:
	 stdout 2025-08-14T16:58:05.893056:0.704454 0.999764 -0.018042 -0.012111 0.000000 0.018405 0.999365 0.030511 0.000000 0.011553 -0.030726 0.999461 0.000000 -3.247860 7.118795 3.127060 1.000000 
250814-16:58:09,843 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".
250814-16:58:09,844 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/applywarp_mean".
250814-16:58:10,123 nipype.workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/mcflirt/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/bet_anat/sub-10_t1w_preproc_brain.nii.gz -out sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/coreg_bbr/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-16:58:12,447 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
250814-16:58:12,448 nipype.workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/slicetimer".
250814-16:58:12,589 nipype.workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/mcflirt/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/slicetimer/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
250814-16:58:18,581 nipype.workflow INFO:
	 [Node] Finished "preproc.slicetimer".
250814-16:58:18,583 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/applywarp".
250814-16:58:18,849 nipype.workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/slicetimer/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/bet_anat/sub-10_t1w_preproc_brain.nii.gz -out sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_10_task_name_fingerfootlips/coreg_bbr/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-16:58:35,837 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
250814-16:58:35,839 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/_fwhm_10/smooth".
250814-16:58:36,112 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-17:00:10,543 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-17:00:10,545 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/_fwhm_5/smooth".
250814-17:00:10,757 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-17:01:37,458 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-17:01:37,460 nipype.workflow INFO:
	 [Node] Setting-up "preproc.art" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/art".
250814-17:01:37,691 nipype.workflow INFO:
	 [Node] Running "art" ("nipype.algorithms.rapidart.ArtifactDetect")
250814-17:01:44,164 nipype.workflow INFO:
	 [Node] Finished "preproc.art".
250814-17:01:44,166 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/_fwhm_10/datasink".
250814-17:01:44,541 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-17:01:44,552 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold.par
250814-17:01:44,597 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/art.sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-10/task-fingerfootlips/art.sub-10_ses-test_task-fingerfootlips_bold_outliers.txt
250814-17:01:44,630 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/plot.sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-10/task-fingerfootlips/plot.sub-10_ses-test_task-fingerfootlips_bold.svg
250814-17:01:44,673 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_t1w_preproc_brain.nii.gz
250814-17:01:44,736 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_mean.mat
250814-17:01:44,788 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-17:01:44,851 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/_fwhm_10/ssub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-10/task-fingerfootlips/fwhm-10_ssub-10_ses-test_task-fingerfootlips_bold.nii
250814-17:01:45,93 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-17:01:45,94 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_10_task_name_fingerfootlips/_fwhm_5/datasink".
250814-17:01:45,523 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-17:01:45,532 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold.par
250814-17:01:45,568 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/art.sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-10/task-fingerfootlips/art.sub-10_ses-test_task-fingerfootlips_bold_outliers.txt
250814-17:01:45,601 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/plot.sub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-10/task-fingerfootlips/plot.sub-10_ses-test_task-fingerfootlips_bold.svg
250814-17:01:45,635 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_t1w_preproc_brain.nii.gz
250814-17:01:45,678 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_mean.mat
250814-17:01:45,712 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-10/task-fingerfootlips/sub-10_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-17:01:45,757 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_10_task_name_fingerfootlips/_fwhm_5/ssub-10_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-10/task-fingerfootlips/fwhm-5_ssub-10_ses-test_task-fingerfootlips_bold.nii
250814-17:01:45,926 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-17:01:45,928 nipype.workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/selectfiles".
250814-17:01:45,994 nipype.workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
250814-17:01:46,116 nipype.workflow INFO:
	 [Node] Finished "preproc.selectfiles".
250814-17:01:46,118 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/bet_anat".
250814-17:01:46,294 nipype.workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/bet_anat/sub-09_t1w_preproc_brain.nii.gz -f 0.50 -R
250814-17:02:04,134 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
250814-17:02:04,136 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/segmentation".
250814-17:02:04,343 nipype.workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/segmentation/sub-09_t1w_preproc_brain.nii.gz
250814-17:05:40,440 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
250814-17:05:40,451 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/threshold".
250814-17:05:40,618 nipype.workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/segmentation/sub-09_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/threshold/sub-09_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-17:05:42,242 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
250814-17:05:42,244 nipype.workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/extract".
250814-17:05:42,438 nipype.workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-09/ses-test/func/sub-09_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/extract/sub-09_ses-test_task-fingerfootlips_bold_roi.nii 4 -1
250814-17:05:45,171 nipype.workflow INFO:
	 [Node] Finished "preproc.extract".
250814-17:05:45,173 nipype.workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/mcflirt".
250814-17:05:45,320 nipype.workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/extract/sub-09_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/mcflirt/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots
250814-17:06:58,206 nipype.workflow INFO:
	 [Node] Finished "preproc.mcflirt".
250814-17:06:58,208 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/coreg_pre".
250814-17:06:58,463 nipype.workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/mcflirt/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/bet_anat/sub-09_t1w_preproc_brain.nii.gz -out sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
250814-17:07:09,809 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
250814-17:07:09,811 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/coreg_bbr".
250814-17:07:10,156 nipype.workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/mcflirt/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-09/anat/sub-09_t1w_preproc.nii.gz -out sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/coreg_pre/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/threshold/sub-09_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-17:09:29,947 nipype.interface INFO:
	 stdout 2025-08-14T17:09:29.946948:Applying POWELL correction
250814-17:09:29,952 nipype.interface INFO:
	 stdout 2025-08-14T17:09:29.946948:finit, fend, fextrap = 0.495133 , 0.494141 , 0.493332
250814-17:09:31,463 nipype.interface INFO:
	 stdout 2025-08-14T17:09:31.463176:fval = 0.491276
250814-17:09:36,164 nipype.interface INFO:
	 stdout 2025-08-14T17:09:36.164622:0.491133 0.999998 0.000330 -0.001809 0.000000 -0.000240 0.998763 0.049713 0.000000 0.001823 -0.049712 0.998762 0.000000 0.327666 8.323015 0.040746 1.000000 
250814-17:09:39,990 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".
250814-17:09:39,992 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/applywarp_mean".
250814-17:09:40,250 nipype.workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/mcflirt/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/bet_anat/sub-09_t1w_preproc_brain.nii.gz -out sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/coreg_bbr/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-17:09:42,634 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
250814-17:09:42,636 nipype.workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/slicetimer".
250814-17:09:42,748 nipype.workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/mcflirt/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/slicetimer/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
250814-17:09:47,909 nipype.workflow INFO:
	 [Node] Finished "preproc.slicetimer".
250814-17:09:47,911 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/applywarp".
250814-17:09:48,298 nipype.workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/slicetimer/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/bet_anat/sub-09_t1w_preproc_brain.nii.gz -out sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_09_task_name_fingerfootlips/coreg_bbr/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-17:10:01,967 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
250814-17:10:01,969 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/_fwhm_10/smooth".
250814-17:10:02,245 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-17:11:34,241 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-17:11:34,243 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/_fwhm_5/smooth".
250814-17:11:34,433 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-17:13:05,96 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-17:13:05,97 nipype.workflow INFO:
	 [Node] Setting-up "preproc.art" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/art".
250814-17:13:05,337 nipype.workflow INFO:
	 [Node] Running "art" ("nipype.algorithms.rapidart.ArtifactDetect")
250814-17:13:14,701 nipype.workflow INFO:
	 [Node] Finished "preproc.art".
250814-17:13:14,702 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/_fwhm_10/datasink".
250814-17:13:15,140 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-17:13:15,149 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold.par
250814-17:13:15,196 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/art.sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-09/task-fingerfootlips/art.sub-09_ses-test_task-fingerfootlips_bold_outliers.txt
250814-17:13:15,235 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/plot.sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-09/task-fingerfootlips/plot.sub-09_ses-test_task-fingerfootlips_bold.svg
250814-17:13:15,277 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_t1w_preproc_brain.nii.gz
250814-17:13:15,330 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_mean.mat
250814-17:13:15,374 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-17:13:15,432 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/_fwhm_10/ssub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-09/task-fingerfootlips/fwhm-10_ssub-09_ses-test_task-fingerfootlips_bold.nii
250814-17:13:15,675 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-17:13:15,676 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_09_task_name_fingerfootlips/_fwhm_5/datasink".
250814-17:13:16,118 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-17:13:16,127 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold.par
250814-17:13:16,164 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/art.sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-09/task-fingerfootlips/art.sub-09_ses-test_task-fingerfootlips_bold_outliers.txt
250814-17:13:16,200 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/plot.sub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-09/task-fingerfootlips/plot.sub-09_ses-test_task-fingerfootlips_bold.svg
250814-17:13:16,236 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_t1w_preproc_brain.nii.gz
250814-17:13:16,276 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_mean.mat
250814-17:13:16,316 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-09/task-fingerfootlips/sub-09_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-17:13:16,356 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_09_task_name_fingerfootlips/_fwhm_5/ssub-09_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-09/task-fingerfootlips/fwhm-5_ssub-09_ses-test_task-fingerfootlips_bold.nii
250814-17:13:16,522 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-17:13:16,524 nipype.workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/selectfiles".
250814-17:13:16,612 nipype.workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
250814-17:13:16,751 nipype.workflow INFO:
	 [Node] Finished "preproc.selectfiles".
250814-17:13:16,753 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/bet_anat".
250814-17:13:16,997 nipype.workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/bet_anat/sub-08_t1w_preproc_brain.nii.gz -f 0.50 -R
250814-17:13:35,401 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
250814-17:13:35,403 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/segmentation".
250814-17:13:35,594 nipype.workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/segmentation/sub-08_t1w_preproc_brain.nii.gz
250814-17:17:07,399 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
250814-17:17:07,407 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/threshold".
250814-17:17:07,592 nipype.workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/segmentation/sub-08_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/threshold/sub-08_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-17:17:09,358 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
250814-17:17:09,359 nipype.workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/extract".
250814-17:17:09,641 nipype.workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-08/ses-test/func/sub-08_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/extract/sub-08_ses-test_task-fingerfootlips_bold_roi.nii 4 -1
250814-17:17:13,395 nipype.workflow INFO:
	 [Node] Finished "preproc.extract".
250814-17:17:13,397 nipype.workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/mcflirt".
250814-17:17:13,528 nipype.workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/extract/sub-08_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/mcflirt/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots
250814-17:18:25,154 nipype.workflow INFO:
	 [Node] Finished "preproc.mcflirt".
250814-17:18:25,156 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/coreg_pre".
250814-17:18:25,400 nipype.workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/mcflirt/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/bet_anat/sub-08_t1w_preproc_brain.nii.gz -out sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
250814-17:18:37,153 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
250814-17:18:37,155 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/coreg_bbr".
250814-17:18:37,556 nipype.workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/mcflirt/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-08/anat/sub-08_t1w_preproc.nii.gz -out sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/coreg_pre/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/threshold/sub-08_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-17:20:56,713 nipype.interface INFO:
	 stdout 2025-08-14T17:20:56.713228:0.564155 0.999919 -0.011650 0.005134 0.000000 0.011405 0.998898 0.045521 0.000000 -0.005659 -0.045458 0.998950 0.000000 0.044970 8.521305 -1.052079 1.000000 
250814-17:21:00,496 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".
250814-17:21:00,497 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/applywarp_mean".
250814-17:21:00,747 nipype.workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/mcflirt/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/bet_anat/sub-08_t1w_preproc_brain.nii.gz -out sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/coreg_bbr/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-17:21:02,972 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
250814-17:21:02,974 nipype.workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/slicetimer".
250814-17:21:03,145 nipype.workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/mcflirt/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/slicetimer/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
250814-17:21:08,75 nipype.workflow INFO:
	 [Node] Finished "preproc.slicetimer".
250814-17:21:08,76 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/applywarp".
250814-17:21:08,299 nipype.workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/slicetimer/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/bet_anat/sub-08_t1w_preproc_brain.nii.gz -out sub-08_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-08_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_08_task_name_fingerfootlips/coreg_bbr/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-17:21:23,526 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
250814-17:21:23,528 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/_fwhm_10/smooth".
250814-17:21:23,719 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-17:22:59,560 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-17:22:59,563 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/_fwhm_5/smooth".
250814-17:22:59,773 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-17:24:32,71 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-17:24:32,72 nipype.workflow INFO:
	 [Node] Setting-up "preproc.art" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/art".
250814-17:24:32,350 nipype.workflow INFO:
	 [Node] Running "art" ("nipype.algorithms.rapidart.ArtifactDetect")
250814-17:24:40,242 nipype.workflow INFO:
	 [Node] Finished "preproc.art".
250814-17:24:40,244 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/_fwhm_10/datasink".
250814-17:24:40,541 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-17:24:40,548 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_08_task_name_fingerfootlips/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-08/task-fingerfootlips/sub-08_ses-test_task-fingerfootlips_bold.par
250814-17:24:40,620 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_08_task_name_fingerfootlips/art.sub-08_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-08/task-fingerfootlips/art.sub-08_ses-test_task-fingerfootlips_bold_outliers.txt
250814-17:24:40,657 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_08_task_name_fingerfootlips/plot.sub-08_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-08/task-fingerfootlips/plot.sub-08_ses-test_task-fingerfootlips_bold.svg
250814-17:24:40,695 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_08_task_name_fingerfootlips/sub-08_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-08/task-fingerfootlips/sub-08_t1w_preproc_brain.nii.gz
250814-17:24:40,746 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_08_task_name_fingerfootlips/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-08/task-fingerfootlips/sub-08_ses-test_task-fingerfootlips_bold_mean.mat
250814-17:24:40,790 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_08_task_name_fingerfootlips/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-08/task-fingerfootlips/sub-08_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-17:24:40,843 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_08_task_name_fingerfootlips/_fwhm_10/ssub-08_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-08/task-fingerfootlips/fwhm-10_ssub-08_ses-test_task-fingerfootlips_bold.nii
250814-17:24:41,61 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-17:24:41,64 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_08_task_name_fingerfootlips/_fwhm_5/datasink".
250814-17:24:41,529 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-17:24:41,538 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_08_task_name_fingerfootlips/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-08/task-fingerfootlips/sub-08_ses-test_task-fingerfootlips_bold.par
250814-17:24:41,571 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_08_task_name_fingerfootlips/art.sub-08_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-08/task-fingerfootlips/art.sub-08_ses-test_task-fingerfootlips_bold_outliers.txt
250814-17:24:41,609 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_08_task_name_fingerfootlips/plot.sub-08_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-08/task-fingerfootlips/plot.sub-08_ses-test_task-fingerfootlips_bold.svg
250814-17:24:41,645 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_08_task_name_fingerfootlips/sub-08_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-08/task-fingerfootlips/sub-08_t1w_preproc_brain.nii.gz
250814-17:24:41,685 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_08_task_name_fingerfootlips/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-08/task-fingerfootlips/sub-08_ses-test_task-fingerfootlips_bold_mean.mat
250814-17:24:41,716 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_08_task_name_fingerfootlips/sub-08_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-08/task-fingerfootlips/sub-08_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-17:24:41,758 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_08_task_name_fingerfootlips/_fwhm_5/ssub-08_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-08/task-fingerfootlips/fwhm-5_ssub-08_ses-test_task-fingerfootlips_bold.nii
250814-17:24:41,926 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-17:24:41,929 nipype.workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/selectfiles".
250814-17:24:41,997 nipype.workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
250814-17:24:42,104 nipype.workflow INFO:
	 [Node] Finished "preproc.selectfiles".
250814-17:24:42,106 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/bet_anat".
250814-17:24:42,282 nipype.workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/bet_anat/sub-07_t1w_preproc_brain.nii.gz -f 0.50 -R
250814-17:24:53,73 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
250814-17:24:53,75 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/segmentation".
250814-17:24:53,310 nipype.workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/segmentation/sub-07_t1w_preproc_brain.nii.gz
250814-17:28:12,959 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
250814-17:28:12,961 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/threshold".
250814-17:28:13,131 nipype.workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/segmentation/sub-07_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/threshold/sub-07_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-17:28:14,594 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
250814-17:28:14,596 nipype.workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/extract".
250814-17:28:14,819 nipype.workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-07/ses-test/func/sub-07_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/extract/sub-07_ses-test_task-fingerfootlips_bold_roi.nii 4 -1
250814-17:28:18,17 nipype.workflow INFO:
	 [Node] Finished "preproc.extract".
250814-17:28:18,19 nipype.workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/mcflirt".
250814-17:28:18,148 nipype.workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/extract/sub-07_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/mcflirt/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots
250814-17:29:31,531 nipype.workflow INFO:
	 [Node] Finished "preproc.mcflirt".
250814-17:29:31,533 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/coreg_pre".
250814-17:29:31,841 nipype.workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/mcflirt/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/bet_anat/sub-07_t1w_preproc_brain.nii.gz -out sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
250814-17:29:42,564 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
250814-17:29:42,565 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/coreg_bbr".
250814-17:29:43,49 nipype.workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/mcflirt/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-07/anat/sub-07_t1w_preproc.nii.gz -out sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/coreg_pre/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/threshold/sub-07_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-17:31:48,562 nipype.interface INFO:
	 stdout 2025-08-14T17:31:48.562817:0.635549 0.999910 -0.013012 0.003316 0.000000 0.012764 0.997717 0.066319 0.000000 -0.004172 -0.066270 0.997793 0.000000 -0.419081 8.819080 0.381570 1.000000 
250814-17:31:52,263 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".
250814-17:31:52,265 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/applywarp_mean".
250814-17:31:52,527 nipype.workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/mcflirt/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/bet_anat/sub-07_t1w_preproc_brain.nii.gz -out sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/coreg_bbr/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-17:31:54,874 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
250814-17:31:54,876 nipype.workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/slicetimer".
250814-17:31:55,23 nipype.workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/mcflirt/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/slicetimer/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
250814-17:32:00,199 nipype.workflow INFO:
	 [Node] Finished "preproc.slicetimer".
250814-17:32:00,200 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/applywarp".
250814-17:32:00,450 nipype.workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/slicetimer/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/bet_anat/sub-07_t1w_preproc_brain.nii.gz -out sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_07_task_name_fingerfootlips/coreg_bbr/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-17:32:13,891 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
250814-17:32:13,892 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/_fwhm_10/smooth".
250814-17:32:14,105 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-17:33:35,740 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-17:33:35,742 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/_fwhm_5/smooth".
250814-17:33:35,916 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-17:34:55,175 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-17:34:55,177 nipype.workflow INFO:
	 [Node] Setting-up "preproc.art" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/art".
250814-17:34:55,385 nipype.workflow INFO:
	 [Node] Running "art" ("nipype.algorithms.rapidart.ArtifactDetect")
250814-17:35:02,411 nipype.workflow INFO:
	 [Node] Finished "preproc.art".
250814-17:35:02,412 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/_fwhm_10/datasink".
250814-17:35:02,810 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-17:35:02,817 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-07/task-fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold.par
250814-17:35:02,860 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/art.sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-07/task-fingerfootlips/art.sub-07_ses-test_task-fingerfootlips_bold_outliers.txt
250814-17:35:02,896 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/plot.sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-07/task-fingerfootlips/plot.sub-07_ses-test_task-fingerfootlips_bold.svg
250814-17:35:02,933 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/sub-07_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-07/task-fingerfootlips/sub-07_t1w_preproc_brain.nii.gz
250814-17:35:02,982 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-07/task-fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_mean.mat
250814-17:35:03,23 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-07/task-fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-17:35:03,78 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/_fwhm_10/ssub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-07/task-fingerfootlips/fwhm-10_ssub-07_ses-test_task-fingerfootlips_bold.nii
250814-17:35:03,317 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-17:35:03,319 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_07_task_name_fingerfootlips/_fwhm_5/datasink".
250814-17:35:03,757 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-17:35:03,764 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-07/task-fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold.par
250814-17:35:03,800 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/art.sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-07/task-fingerfootlips/art.sub-07_ses-test_task-fingerfootlips_bold_outliers.txt
250814-17:35:03,842 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/plot.sub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-07/task-fingerfootlips/plot.sub-07_ses-test_task-fingerfootlips_bold.svg
250814-17:35:03,878 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/sub-07_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-07/task-fingerfootlips/sub-07_t1w_preproc_brain.nii.gz
250814-17:35:03,918 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-07/task-fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_mean.mat
250814-17:35:03,951 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-07/task-fingerfootlips/sub-07_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-17:35:03,991 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_07_task_name_fingerfootlips/_fwhm_5/ssub-07_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-07/task-fingerfootlips/fwhm-5_ssub-07_ses-test_task-fingerfootlips_bold.nii
250814-17:35:04,148 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-17:35:04,150 nipype.workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/selectfiles".
250814-17:35:04,212 nipype.workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
250814-17:35:04,341 nipype.workflow INFO:
	 [Node] Finished "preproc.selectfiles".
250814-17:35:04,343 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/bet_anat".
250814-17:35:04,528 nipype.workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-06/anat/sub-06_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/bet_anat/sub-06_t1w_preproc_brain.nii.gz -f 0.50 -R
250814-17:35:21,580 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
250814-17:35:21,582 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/segmentation".
250814-17:35:21,777 nipype.workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/segmentation/sub-06_t1w_preproc_brain.nii.gz
250814-17:38:29,92 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
250814-17:38:29,94 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/threshold".
250814-17:38:29,282 nipype.workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/segmentation/sub-06_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/threshold/sub-06_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-17:38:30,822 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
250814-17:38:30,824 nipype.workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/extract".
250814-17:38:31,11 nipype.workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-06/ses-test/func/sub-06_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/extract/sub-06_ses-test_task-fingerfootlips_bold_roi.nii 4 -1
250814-17:38:33,611 nipype.workflow INFO:
	 [Node] Finished "preproc.extract".
250814-17:38:33,612 nipype.workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/mcflirt".
250814-17:38:33,777 nipype.workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/extract/sub-06_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/mcflirt/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots
250814-17:39:40,219 nipype.workflow INFO:
	 [Node] Finished "preproc.mcflirt".
250814-17:39:40,221 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/coreg_pre".
250814-17:39:40,424 nipype.workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/mcflirt/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/bet_anat/sub-06_t1w_preproc_brain.nii.gz -out sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
250814-17:39:50,538 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
250814-17:39:50,539 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/coreg_bbr".
250814-17:39:50,818 nipype.workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/mcflirt/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-06/anat/sub-06_t1w_preproc.nii.gz -out sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/coreg_pre/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/threshold/sub-06_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-17:41:33,846 nipype.interface INFO:
	 stdout 2025-08-14T17:41:33.846057:0.613778 0.999651 -0.012565 -0.023239 0.000000 0.012734 0.999893 0.007149 0.000000 0.023147 -0.007442 0.999704 0.000000 -3.545259 5.066937 7.737401 1.000000 
250814-17:41:37,452 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".
250814-17:41:37,454 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/applywarp_mean".
250814-17:41:37,653 nipype.workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/mcflirt/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/bet_anat/sub-06_t1w_preproc_brain.nii.gz -out sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/coreg_bbr/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-17:41:40,14 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
250814-17:41:40,17 nipype.workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/slicetimer".
250814-17:41:40,159 nipype.workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/mcflirt/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/slicetimer/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
250814-17:41:45,137 nipype.workflow INFO:
	 [Node] Finished "preproc.slicetimer".
250814-17:41:45,139 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/applywarp".
250814-17:41:45,396 nipype.workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/slicetimer/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/bet_anat/sub-06_t1w_preproc_brain.nii.gz -out sub-06_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-06_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_06_task_name_fingerfootlips/coreg_bbr/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-17:42:00,129 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
250814-17:42:00,131 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/_fwhm_10/smooth".
250814-17:42:00,386 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-17:43:23,254 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-17:43:23,256 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/_fwhm_5/smooth".
250814-17:43:23,471 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-17:44:43,832 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-17:44:43,834 nipype.workflow INFO:
	 [Node] Setting-up "preproc.art" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/art".
250814-17:44:44,54 nipype.workflow INFO:
	 [Node] Running "art" ("nipype.algorithms.rapidart.ArtifactDetect")
250814-17:44:51,316 nipype.workflow INFO:
	 [Node] Finished "preproc.art".
250814-17:44:51,317 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/_fwhm_10/datasink".
250814-17:44:51,715 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-17:44:51,723 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_06_task_name_fingerfootlips/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-06/task-fingerfootlips/sub-06_ses-test_task-fingerfootlips_bold.par
250814-17:44:51,770 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_06_task_name_fingerfootlips/art.sub-06_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-06/task-fingerfootlips/art.sub-06_ses-test_task-fingerfootlips_bold_outliers.txt
250814-17:44:51,806 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_06_task_name_fingerfootlips/plot.sub-06_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-06/task-fingerfootlips/plot.sub-06_ses-test_task-fingerfootlips_bold.svg
250814-17:44:51,846 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_06_task_name_fingerfootlips/sub-06_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-06/task-fingerfootlips/sub-06_t1w_preproc_brain.nii.gz
250814-17:44:51,903 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_06_task_name_fingerfootlips/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-06/task-fingerfootlips/sub-06_ses-test_task-fingerfootlips_bold_mean.mat
250814-17:44:51,953 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_06_task_name_fingerfootlips/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-06/task-fingerfootlips/sub-06_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-17:44:52,15 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_06_task_name_fingerfootlips/_fwhm_10/ssub-06_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-06/task-fingerfootlips/fwhm-10_ssub-06_ses-test_task-fingerfootlips_bold.nii
250814-17:44:52,274 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-17:44:52,276 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_06_task_name_fingerfootlips/_fwhm_5/datasink".
250814-17:44:52,680 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-17:44:52,689 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_06_task_name_fingerfootlips/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-06/task-fingerfootlips/sub-06_ses-test_task-fingerfootlips_bold.par
250814-17:44:52,726 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_06_task_name_fingerfootlips/art.sub-06_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-06/task-fingerfootlips/art.sub-06_ses-test_task-fingerfootlips_bold_outliers.txt
250814-17:44:52,765 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_06_task_name_fingerfootlips/plot.sub-06_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-06/task-fingerfootlips/plot.sub-06_ses-test_task-fingerfootlips_bold.svg
250814-17:44:52,802 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_06_task_name_fingerfootlips/sub-06_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-06/task-fingerfootlips/sub-06_t1w_preproc_brain.nii.gz
250814-17:44:52,846 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_06_task_name_fingerfootlips/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-06/task-fingerfootlips/sub-06_ses-test_task-fingerfootlips_bold_mean.mat
250814-17:44:52,884 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_06_task_name_fingerfootlips/sub-06_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-06/task-fingerfootlips/sub-06_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-17:44:52,948 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_06_task_name_fingerfootlips/_fwhm_5/ssub-06_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-06/task-fingerfootlips/fwhm-5_ssub-06_ses-test_task-fingerfootlips_bold.nii
250814-17:44:53,124 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-17:44:53,126 nipype.workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/selectfiles".
250814-17:44:53,197 nipype.workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
250814-17:44:53,309 nipype.workflow INFO:
	 [Node] Finished "preproc.selectfiles".
250814-17:44:53,311 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/bet_anat".
250814-17:44:53,488 nipype.workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/bet_anat/sub-05_t1w_preproc_brain.nii.gz -f 0.50 -R
250814-17:45:09,302 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
250814-17:45:09,304 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/segmentation".
250814-17:45:09,546 nipype.workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/segmentation/sub-05_t1w_preproc_brain.nii.gz
250814-17:48:27,368 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
250814-17:48:27,370 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/threshold".
250814-17:48:27,492 nipype.workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/segmentation/sub-05_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/threshold/sub-05_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-17:48:28,936 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
250814-17:48:28,938 nipype.workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/extract".
250814-17:48:29,81 nipype.workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-05/ses-test/func/sub-05_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/extract/sub-05_ses-test_task-fingerfootlips_bold_roi.nii 4 -1
250814-17:48:32,63 nipype.workflow INFO:
	 [Node] Finished "preproc.extract".
250814-17:48:32,65 nipype.workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/mcflirt".
250814-17:48:32,182 nipype.workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/extract/sub-05_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/mcflirt/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots
250814-17:49:34,785 nipype.workflow INFO:
	 [Node] Finished "preproc.mcflirt".
250814-17:49:34,786 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/coreg_pre".
250814-17:49:34,965 nipype.workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/mcflirt/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/bet_anat/sub-05_t1w_preproc_brain.nii.gz -out sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
250814-17:49:45,990 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
250814-17:49:45,992 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/coreg_bbr".
250814-17:49:46,314 nipype.workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/mcflirt/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-05/anat/sub-05_t1w_preproc.nii.gz -out sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/coreg_pre/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/threshold/sub-05_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-17:50:08,144 nipype.interface INFO:
	 stdout 2025-08-14T17:50:08.143872:Applying POWELL correction
250814-17:50:08,146 nipype.interface INFO:
	 stdout 2025-08-14T17:50:08.143872:finit, fend, fextrap = 0.527561 , 0.525503 , 0.524907
250814-17:50:08,159 nipype.interface INFO:
	 stdout 2025-08-14T17:50:08.159649:fval = 0.523841
250814-17:51:41,949 nipype.interface INFO:
	 stdout 2025-08-14T17:51:41.949655:0.534233 0.999558 0.012936 -0.026785 0.000000 -0.011966 0.999278 0.036071 0.000000 0.027232 -0.035734 0.998990 0.000000 -1.350836 4.665616 7.743115 1.000000 
250814-17:51:46,69 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".
250814-17:51:46,71 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/applywarp_mean".
250814-17:51:46,302 nipype.workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/mcflirt/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/bet_anat/sub-05_t1w_preproc_brain.nii.gz -out sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/coreg_bbr/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-17:51:48,465 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
250814-17:51:48,467 nipype.workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/slicetimer".
250814-17:51:48,592 nipype.workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/mcflirt/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/slicetimer/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
250814-17:51:53,692 nipype.workflow INFO:
	 [Node] Finished "preproc.slicetimer".
250814-17:51:53,694 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/applywarp".
250814-17:51:53,896 nipype.workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/slicetimer/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/bet_anat/sub-05_t1w_preproc_brain.nii.gz -out sub-05_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-05_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_05_task_name_fingerfootlips/coreg_bbr/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-17:52:06,830 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
250814-17:52:06,832 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/_fwhm_10/smooth".
250814-17:52:06,989 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-17:53:30,535 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-17:53:30,537 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/_fwhm_5/smooth".
250814-17:53:30,671 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-17:54:51,896 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-17:54:51,898 nipype.workflow INFO:
	 [Node] Setting-up "preproc.art" in "/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/art".
250814-17:54:52,119 nipype.workflow INFO:
	 [Node] Running "art" ("nipype.algorithms.rapidart.ArtifactDetect")
250814-17:54:58,966 nipype.workflow INFO:
	 [Node] Finished "preproc.art".
250814-17:54:58,968 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/_fwhm_10/datasink".
250814-17:54:59,336 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-17:54:59,346 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_05_task_name_fingerfootlips/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-05/task-fingerfootlips/sub-05_ses-test_task-fingerfootlips_bold.par
250814-17:54:59,383 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_05_task_name_fingerfootlips/art.sub-05_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-05/task-fingerfootlips/art.sub-05_ses-test_task-fingerfootlips_bold_outliers.txt
250814-17:54:59,412 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_05_task_name_fingerfootlips/plot.sub-05_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-05/task-fingerfootlips/plot.sub-05_ses-test_task-fingerfootlips_bold.svg
250814-17:54:59,442 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_05_task_name_fingerfootlips/sub-05_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-05/task-fingerfootlips/sub-05_t1w_preproc_brain.nii.gz
250814-17:54:59,480 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_05_task_name_fingerfootlips/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-05/task-fingerfootlips/sub-05_ses-test_task-fingerfootlips_bold_mean.mat
250814-17:54:59,516 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_05_task_name_fingerfootlips/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-05/task-fingerfootlips/sub-05_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-17:54:59,568 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_05_task_name_fingerfootlips/_fwhm_10/ssub-05_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-05/task-fingerfootlips/fwhm-10_ssub-05_ses-test_task-fingerfootlips_bold.nii
250814-17:54:59,781 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-17:54:59,783 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_05_task_name_fingerfootlips/_fwhm_5/datasink".
250814-17:55:00,207 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-17:55:00,216 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_05_task_name_fingerfootlips/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-05/task-fingerfootlips/sub-05_ses-test_task-fingerfootlips_bold.par
250814-17:55:00,251 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_05_task_name_fingerfootlips/art.sub-05_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-05/task-fingerfootlips/art.sub-05_ses-test_task-fingerfootlips_bold_outliers.txt
250814-17:55:00,282 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_05_task_name_fingerfootlips/plot.sub-05_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-05/task-fingerfootlips/plot.sub-05_ses-test_task-fingerfootlips_bold.svg
250814-17:55:00,313 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_05_task_name_fingerfootlips/sub-05_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-05/task-fingerfootlips/sub-05_t1w_preproc_brain.nii.gz
250814-17:55:00,347 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_05_task_name_fingerfootlips/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-05/task-fingerfootlips/sub-05_ses-test_task-fingerfootlips_bold_mean.mat
250814-17:55:00,375 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_05_task_name_fingerfootlips/sub-05_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-05/task-fingerfootlips/sub-05_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-17:55:00,408 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_05_task_name_fingerfootlips/_fwhm_5/ssub-05_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-05/task-fingerfootlips/fwhm-5_ssub-05_ses-test_task-fingerfootlips_bold.nii
250814-17:55:00,558 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-17:55:00,559 nipype.workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/selectfiles".
250814-17:55:00,627 nipype.workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
250814-17:55:00,722 nipype.workflow INFO:
	 [Node] Finished "preproc.selectfiles".
250814-17:55:00,723 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/bet_anat".
250814-17:55:00,874 nipype.workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/bet_anat/sub-04_t1w_preproc_brain.nii.gz -f 0.50 -R
250814-17:55:17,552 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
250814-17:55:17,554 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/segmentation".
250814-17:55:17,737 nipype.workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/segmentation/sub-04_t1w_preproc_brain.nii.gz
250814-17:58:27,55 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
250814-17:58:27,57 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/threshold".
250814-17:58:27,249 nipype.workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/segmentation/sub-04_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/threshold/sub-04_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-17:58:28,815 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
250814-17:58:28,817 nipype.workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/extract".
250814-17:58:29,21 nipype.workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-04/ses-test/func/sub-04_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/extract/sub-04_ses-test_task-fingerfootlips_bold_roi.nii 4 -1
250814-17:58:31,800 nipype.workflow INFO:
	 [Node] Finished "preproc.extract".
250814-17:58:31,801 nipype.workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/mcflirt".
250814-17:58:31,932 nipype.workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/extract/sub-04_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/mcflirt/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots
250814-17:59:40,69 nipype.workflow INFO:
	 [Node] Finished "preproc.mcflirt".
250814-17:59:40,71 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/coreg_pre".
250814-17:59:40,299 nipype.workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/mcflirt/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/bet_anat/sub-04_t1w_preproc_brain.nii.gz -out sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
250814-17:59:52,420 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
250814-17:59:52,422 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/coreg_bbr".
250814-17:59:52,727 nipype.workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/mcflirt/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-04/anat/sub-04_t1w_preproc.nii.gz -out sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/coreg_pre/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/threshold/sub-04_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-18:01:59,792 nipype.interface INFO:
	 stdout 2025-08-14T18:01:59.792501:0.643176 0.999737 -0.014336 -0.017924 0.000000 0.014262 0.999889 -0.004280 0.000000 0.017983 0.004023 0.999830 0.000000 -2.970484 1.646157 8.462953 1.000000 
250814-18:02:04,154 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".
250814-18:02:04,156 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/applywarp_mean".
250814-18:02:04,485 nipype.workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/mcflirt/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/bet_anat/sub-04_t1w_preproc_brain.nii.gz -out sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/coreg_bbr/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-18:02:06,924 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
250814-18:02:06,926 nipype.workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/slicetimer".
250814-18:02:07,36 nipype.workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/mcflirt/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/slicetimer/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
250814-18:02:12,961 nipype.workflow INFO:
	 [Node] Finished "preproc.slicetimer".
250814-18:02:12,963 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/applywarp".
250814-18:02:13,222 nipype.workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/slicetimer/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/bet_anat/sub-04_t1w_preproc_brain.nii.gz -out sub-04_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-04_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_04_task_name_fingerfootlips/coreg_bbr/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-18:02:27,768 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
250814-18:02:27,770 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/_fwhm_10/smooth".
250814-18:02:27,989 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-18:03:55,664 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-18:03:55,666 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/_fwhm_5/smooth".
250814-18:03:55,859 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-18:05:23,353 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-18:05:23,355 nipype.workflow INFO:
	 [Node] Setting-up "preproc.art" in "/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/art".
250814-18:05:23,608 nipype.workflow INFO:
	 [Node] Running "art" ("nipype.algorithms.rapidart.ArtifactDetect")
250814-18:05:31,39 nipype.workflow INFO:
	 [Node] Finished "preproc.art".
250814-18:05:31,40 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/_fwhm_10/datasink".
250814-18:05:31,468 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-18:05:31,476 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_04_task_name_fingerfootlips/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-04/task-fingerfootlips/sub-04_ses-test_task-fingerfootlips_bold.par
250814-18:05:31,517 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_04_task_name_fingerfootlips/art.sub-04_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-04/task-fingerfootlips/art.sub-04_ses-test_task-fingerfootlips_bold_outliers.txt
250814-18:05:31,555 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_04_task_name_fingerfootlips/plot.sub-04_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-04/task-fingerfootlips/plot.sub-04_ses-test_task-fingerfootlips_bold.svg
250814-18:05:31,620 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_04_task_name_fingerfootlips/sub-04_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-04/task-fingerfootlips/sub-04_t1w_preproc_brain.nii.gz
250814-18:05:31,677 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_04_task_name_fingerfootlips/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-04/task-fingerfootlips/sub-04_ses-test_task-fingerfootlips_bold_mean.mat
250814-18:05:31,720 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_04_task_name_fingerfootlips/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-04/task-fingerfootlips/sub-04_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-18:05:31,778 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_04_task_name_fingerfootlips/_fwhm_10/ssub-04_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-04/task-fingerfootlips/fwhm-10_ssub-04_ses-test_task-fingerfootlips_bold.nii
250814-18:05:32,33 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-18:05:32,35 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_04_task_name_fingerfootlips/_fwhm_5/datasink".
250814-18:05:32,440 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-18:05:32,448 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_04_task_name_fingerfootlips/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-04/task-fingerfootlips/sub-04_ses-test_task-fingerfootlips_bold.par
250814-18:05:32,485 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_04_task_name_fingerfootlips/art.sub-04_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-04/task-fingerfootlips/art.sub-04_ses-test_task-fingerfootlips_bold_outliers.txt
250814-18:05:32,522 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_04_task_name_fingerfootlips/plot.sub-04_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-04/task-fingerfootlips/plot.sub-04_ses-test_task-fingerfootlips_bold.svg
250814-18:05:32,558 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_04_task_name_fingerfootlips/sub-04_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-04/task-fingerfootlips/sub-04_t1w_preproc_brain.nii.gz
250814-18:05:32,600 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_04_task_name_fingerfootlips/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-04/task-fingerfootlips/sub-04_ses-test_task-fingerfootlips_bold_mean.mat
250814-18:05:32,633 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_04_task_name_fingerfootlips/sub-04_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-04/task-fingerfootlips/sub-04_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-18:05:32,691 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_04_task_name_fingerfootlips/_fwhm_5/ssub-04_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-04/task-fingerfootlips/fwhm-5_ssub-04_ses-test_task-fingerfootlips_bold.nii
250814-18:05:32,891 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-18:05:32,893 nipype.workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/selectfiles".
250814-18:05:32,966 nipype.workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
250814-18:05:33,86 nipype.workflow INFO:
	 [Node] Finished "preproc.selectfiles".
250814-18:05:33,88 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/bet_anat".
250814-18:05:33,273 nipype.workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/bet_anat/sub-03_t1w_preproc_brain.nii.gz -f 0.50 -R
250814-18:05:59,565 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
250814-18:05:59,567 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/segmentation".
250814-18:05:59,838 nipype.workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/segmentation/sub-03_t1w_preproc_brain.nii.gz
250814-18:09:43,919 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
250814-18:09:43,925 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/threshold".
250814-18:09:44,151 nipype.workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/segmentation/sub-03_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/threshold/sub-03_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-18:09:45,711 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
250814-18:09:45,713 nipype.workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/extract".
250814-18:09:45,897 nipype.workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-03/ses-test/func/sub-03_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/extract/sub-03_ses-test_task-fingerfootlips_bold_roi.nii 4 -1
250814-18:09:48,819 nipype.workflow INFO:
	 [Node] Finished "preproc.extract".
250814-18:09:48,821 nipype.workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/mcflirt".
250814-18:09:48,990 nipype.workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/extract/sub-03_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/mcflirt/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots
250814-18:10:55,832 nipype.workflow INFO:
	 [Node] Finished "preproc.mcflirt".
250814-18:10:55,834 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/coreg_pre".
250814-18:10:56,50 nipype.workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/mcflirt/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/bet_anat/sub-03_t1w_preproc_brain.nii.gz -out sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
250814-18:11:07,230 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
250814-18:11:07,232 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/coreg_bbr".
250814-18:11:07,509 nipype.workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/mcflirt/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-03/anat/sub-03_t1w_preproc.nii.gz -out sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/coreg_pre/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/threshold/sub-03_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-18:14:00,45 nipype.interface INFO:
	 stdout 2025-08-14T18:14:00.045000:Applying POWELL correction
250814-18:14:00,47 nipype.interface INFO:
	 stdout 2025-08-14T18:14:00.045000:finit, fend, fextrap = 0.845359 , 0.842173 , 0.839217
250814-18:14:02,827 nipype.interface INFO:
	 stdout 2025-08-14T18:14:02.827805:fval = 0.833103
250814-18:14:11,796 nipype.interface INFO:
	 stdout 2025-08-14T18:14:11.796185:Applying POWELL correction
250814-18:14:11,798 nipype.interface INFO:
	 stdout 2025-08-14T18:14:11.796185:finit, fend, fextrap = 0.833103 , 0.822085 , 0.819319
250814-18:14:14,68 nipype.interface INFO:
	 stdout 2025-08-14T18:14:14.068589:fval = 0.819158
250814-18:14:26,26 nipype.interface INFO:
	 stdout 2025-08-14T18:14:26.025974:0.818368 0.994562 -0.023915 -0.101361 0.000000 0.040591 0.985322 0.165808 0.000000 0.095908 -0.169021 0.980935 0.000000 -15.054890 24.468187 6.641343 1.000000 
250814-18:14:29,703 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".
250814-18:14:29,705 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/applywarp_mean".
250814-18:14:29,988 nipype.workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/mcflirt/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/bet_anat/sub-03_t1w_preproc_brain.nii.gz -out sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/coreg_bbr/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-18:14:32,338 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
250814-18:14:32,340 nipype.workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/slicetimer".
250814-18:14:32,492 nipype.workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/mcflirt/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/slicetimer/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
250814-18:14:37,100 nipype.workflow INFO:
	 [Node] Finished "preproc.slicetimer".
250814-18:14:37,102 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/applywarp".
250814-18:14:37,312 nipype.workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/slicetimer/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/bet_anat/sub-03_t1w_preproc_brain.nii.gz -out sub-03_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-03_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_03_task_name_fingerfootlips/coreg_bbr/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-18:14:49,997 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
250814-18:14:50,0 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/_fwhm_10/smooth".
250814-18:14:50,125 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-18:16:15,534 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-18:16:15,537 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/_fwhm_5/smooth".
250814-18:16:15,764 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-18:17:46,365 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-18:17:46,367 nipype.workflow INFO:
	 [Node] Setting-up "preproc.art" in "/output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/art".
250814-18:17:46,579 nipype.workflow INFO:
	 [Node] Running "art" ("nipype.algorithms.rapidart.ArtifactDetect")
250814-18:17:53,712 nipype.workflow INFO:
	 [Node] Finished "preproc.art".
250814-18:17:53,714 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/_fwhm_10/datasink".
250814-18:17:54,43 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-18:17:54,52 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_03_task_name_fingerfootlips/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-03/task-fingerfootlips/sub-03_ses-test_task-fingerfootlips_bold.par
250814-18:17:54,89 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_03_task_name_fingerfootlips/art.sub-03_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-03/task-fingerfootlips/art.sub-03_ses-test_task-fingerfootlips_bold_outliers.txt
250814-18:17:54,120 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_03_task_name_fingerfootlips/plot.sub-03_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-03/task-fingerfootlips/plot.sub-03_ses-test_task-fingerfootlips_bold.svg
250814-18:17:54,154 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_03_task_name_fingerfootlips/sub-03_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-03/task-fingerfootlips/sub-03_t1w_preproc_brain.nii.gz
250814-18:17:54,193 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_03_task_name_fingerfootlips/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-03/task-fingerfootlips/sub-03_ses-test_task-fingerfootlips_bold_mean.mat
250814-18:17:54,228 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_03_task_name_fingerfootlips/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-03/task-fingerfootlips/sub-03_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-18:17:54,280 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_03_task_name_fingerfootlips/_fwhm_10/ssub-03_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-03/task-fingerfootlips/fwhm-10_ssub-03_ses-test_task-fingerfootlips_bold.nii
250814-18:17:54,512 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-18:17:54,514 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_03_task_name_fingerfootlips/_fwhm_5/datasink".
250814-18:17:54,948 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-18:17:54,957 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_03_task_name_fingerfootlips/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-03/task-fingerfootlips/sub-03_ses-test_task-fingerfootlips_bold.par
250814-18:17:54,989 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_03_task_name_fingerfootlips/art.sub-03_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-03/task-fingerfootlips/art.sub-03_ses-test_task-fingerfootlips_bold_outliers.txt
250814-18:17:55,19 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_03_task_name_fingerfootlips/plot.sub-03_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-03/task-fingerfootlips/plot.sub-03_ses-test_task-fingerfootlips_bold.svg
250814-18:17:55,50 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_03_task_name_fingerfootlips/sub-03_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-03/task-fingerfootlips/sub-03_t1w_preproc_brain.nii.gz
250814-18:17:55,85 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_03_task_name_fingerfootlips/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-03/task-fingerfootlips/sub-03_ses-test_task-fingerfootlips_bold_mean.mat
250814-18:17:55,112 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_03_task_name_fingerfootlips/sub-03_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-03/task-fingerfootlips/sub-03_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-18:17:55,146 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_03_task_name_fingerfootlips/_fwhm_5/ssub-03_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-03/task-fingerfootlips/fwhm-5_ssub-03_ses-test_task-fingerfootlips_bold.nii
250814-18:17:55,291 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-18:17:55,293 nipype.workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/selectfiles".
250814-18:17:55,349 nipype.workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
250814-18:17:55,448 nipype.workflow INFO:
	 [Node] Finished "preproc.selectfiles".
250814-18:17:55,449 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/bet_anat".
250814-18:17:55,613 nipype.workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/bet_anat/sub-02_t1w_preproc_brain.nii.gz -f 0.50 -R
250814-18:18:18,284 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
250814-18:18:18,285 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/segmentation".
250814-18:18:18,493 nipype.workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/segmentation/sub-02_t1w_preproc_brain.nii.gz
250814-18:23:01,131 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
250814-18:23:01,143 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/threshold".
250814-18:23:01,316 nipype.workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/segmentation/sub-02_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/threshold/sub-02_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-18:23:03,439 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
250814-18:23:03,441 nipype.workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/extract".
250814-18:23:03,642 nipype.workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-02/ses-test/func/sub-02_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/extract/sub-02_ses-test_task-fingerfootlips_bold_roi.nii 4 -1
250814-18:23:06,524 nipype.workflow INFO:
	 [Node] Finished "preproc.extract".
250814-18:23:06,525 nipype.workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/mcflirt".
250814-18:23:06,648 nipype.workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/extract/sub-02_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/mcflirt/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots
250814-18:24:12,235 nipype.workflow INFO:
	 [Node] Finished "preproc.mcflirt".
250814-18:24:12,236 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/coreg_pre".
250814-18:24:12,458 nipype.workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/mcflirt/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/bet_anat/sub-02_t1w_preproc_brain.nii.gz -out sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
250814-18:24:24,939 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
250814-18:24:24,941 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/coreg_bbr".
250814-18:24:25,272 nipype.workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/mcflirt/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-02/anat/sub-02_t1w_preproc.nii.gz -out sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/coreg_pre/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/threshold/sub-02_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-18:25:00,296 nipype.interface INFO:
	 stdout 2025-08-14T18:25:00.296736:Applying POWELL correction
250814-18:25:00,299 nipype.interface INFO:
	 stdout 2025-08-14T18:25:00.296736:finit, fend, fextrap = 0.636058 , 0.634243 , 0.633086
250814-18:25:00,313 nipype.interface INFO:
	 stdout 2025-08-14T18:25:00.313303:fval = 0.633038
250814-18:26:52,624 nipype.interface INFO:
	 stdout 2025-08-14T18:26:52.624236:Applying POWELL correction
250814-18:26:52,626 nipype.interface INFO:
	 stdout 2025-08-14T18:26:52.624236:finit, fend, fextrap = 0.617097 , 0.615939 , 0.61507
250814-18:26:54,177 nipype.interface INFO:
	 stdout 2025-08-14T18:26:54.177020:fval = 0.614254
250814-18:27:04,366 nipype.interface INFO:
	 stdout 2025-08-14T18:27:04.366669:0.613136 0.999978 -0.003721 -0.005552 0.000000 0.004069 0.997933 0.064132 0.000000 0.005302 -0.064154 0.997926 0.000000 -0.049102 10.065387 -1.673802 1.000000 
250814-18:27:10,148 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".
250814-18:27:10,150 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/applywarp_mean".
250814-18:27:10,419 nipype.workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/mcflirt/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/bet_anat/sub-02_t1w_preproc_brain.nii.gz -out sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/coreg_bbr/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-18:27:13,667 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
250814-18:27:13,669 nipype.workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/slicetimer".
250814-18:27:13,802 nipype.workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/mcflirt/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/slicetimer/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
250814-18:27:19,352 nipype.workflow INFO:
	 [Node] Finished "preproc.slicetimer".
250814-18:27:19,353 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/applywarp".
250814-18:27:19,664 nipype.workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/slicetimer/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/bet_anat/sub-02_t1w_preproc_brain.nii.gz -out sub-02_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-02_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_02_task_name_fingerfootlips/coreg_bbr/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-18:27:36,172 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
250814-18:27:36,174 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/_fwhm_10/smooth".
250814-18:27:36,333 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-18:29:01,159 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-18:29:01,162 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/_fwhm_5/smooth".
250814-18:29:01,332 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-18:30:27,18 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-18:30:27,20 nipype.workflow INFO:
	 [Node] Setting-up "preproc.art" in "/output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/art".
250814-18:30:27,274 nipype.workflow INFO:
	 [Node] Running "art" ("nipype.algorithms.rapidart.ArtifactDetect")
250814-18:30:36,344 nipype.workflow INFO:
	 [Node] Finished "preproc.art".
250814-18:30:36,346 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/_fwhm_10/datasink".
250814-18:30:36,723 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-18:30:36,730 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_02_task_name_fingerfootlips/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-02/task-fingerfootlips/sub-02_ses-test_task-fingerfootlips_bold.par
250814-18:30:36,769 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_02_task_name_fingerfootlips/art.sub-02_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-02/task-fingerfootlips/art.sub-02_ses-test_task-fingerfootlips_bold_outliers.txt
250814-18:30:36,799 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_02_task_name_fingerfootlips/plot.sub-02_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-02/task-fingerfootlips/plot.sub-02_ses-test_task-fingerfootlips_bold.svg
250814-18:30:36,838 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_02_task_name_fingerfootlips/sub-02_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-02/task-fingerfootlips/sub-02_t1w_preproc_brain.nii.gz
250814-18:30:36,892 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_02_task_name_fingerfootlips/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-02/task-fingerfootlips/sub-02_ses-test_task-fingerfootlips_bold_mean.mat
250814-18:30:36,935 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_02_task_name_fingerfootlips/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-02/task-fingerfootlips/sub-02_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-18:30:36,992 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_02_task_name_fingerfootlips/_fwhm_10/ssub-02_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-02/task-fingerfootlips/fwhm-10_ssub-02_ses-test_task-fingerfootlips_bold.nii
250814-18:30:37,222 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-18:30:37,225 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_02_task_name_fingerfootlips/_fwhm_5/datasink".
250814-18:30:37,563 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-18:30:37,570 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_02_task_name_fingerfootlips/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-02/task-fingerfootlips/sub-02_ses-test_task-fingerfootlips_bold.par
250814-18:30:37,599 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_02_task_name_fingerfootlips/art.sub-02_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-02/task-fingerfootlips/art.sub-02_ses-test_task-fingerfootlips_bold_outliers.txt
250814-18:30:37,623 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_02_task_name_fingerfootlips/plot.sub-02_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-02/task-fingerfootlips/plot.sub-02_ses-test_task-fingerfootlips_bold.svg
250814-18:30:37,648 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_02_task_name_fingerfootlips/sub-02_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-02/task-fingerfootlips/sub-02_t1w_preproc_brain.nii.gz
250814-18:30:37,685 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_02_task_name_fingerfootlips/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-02/task-fingerfootlips/sub-02_ses-test_task-fingerfootlips_bold_mean.mat
250814-18:30:37,715 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_02_task_name_fingerfootlips/sub-02_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-02/task-fingerfootlips/sub-02_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-18:30:37,751 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_02_task_name_fingerfootlips/_fwhm_5/ssub-02_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-02/task-fingerfootlips/fwhm-5_ssub-02_ses-test_task-fingerfootlips_bold.nii
250814-18:30:37,902 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-18:30:37,903 nipype.workflow INFO:
	 [Node] Setting-up "preproc.selectfiles" in "/output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/selectfiles".
250814-18:30:37,964 nipype.workflow INFO:
	 [Node] Running "selectfiles" ("nipype.interfaces.io.SelectFiles")
250814-18:30:38,70 nipype.workflow INFO:
	 [Node] Finished "preproc.selectfiles".
250814-18:30:38,72 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.bet_anat" in "/output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/bet_anat".
250814-18:30:38,243 nipype.workflow INFO:
	 [Node] Running "bet_anat" ("nipype.interfaces.fsl.preprocess.BET"), a CommandLine Interface with command:
bet /data/ds000114/derivatives/fmriprep/sub-01/anat/sub-01_t1w_preproc.nii.gz /output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/bet_anat/sub-01_t1w_preproc_brain.nii.gz -f 0.50 -R
250814-18:30:54,875 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.bet_anat".
250814-18:30:54,876 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.segmentation" in "/output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/segmentation".
250814-18:30:55,14 nipype.workflow INFO:
	 [Node] Running "segmentation" ("nipype.interfaces.fsl.preprocess.FAST"), a CommandLine Interface with command:
fast -S 1 /output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/segmentation/sub-01_t1w_preproc_brain.nii.gz
250814-18:33:44,58 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.segmentation".
250814-18:33:44,60 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.threshold" in "/output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/threshold".
250814-18:33:44,237 nipype.workflow INFO:
	 [Node] Running "threshold" ("nipype.interfaces.fsl.maths.Threshold"), a CommandLine Interface with command:
fslmaths /output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/segmentation/sub-01_t1w_preproc_brain_pve_2.nii.gz -thr 0.5000000000 -bin /output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/threshold/sub-01_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-18:33:45,605 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.threshold".
250814-18:33:45,607 nipype.workflow INFO:
	 [Node] Setting-up "preproc.extract" in "/output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/extract".
250814-18:33:45,761 nipype.workflow INFO:
	 [Node] Running "extract" ("nipype.interfaces.fsl.utils.ExtractROI"), a CommandLine Interface with command:
fslroi /data/ds000114/sub-01/ses-test/func/sub-01_ses-test_task-fingerfootlips_bold.nii.gz /output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/extract/sub-01_ses-test_task-fingerfootlips_bold_roi.nii 4 -1
250814-18:33:48,36 nipype.workflow INFO:
	 [Node] Finished "preproc.extract".
250814-18:33:48,37 nipype.workflow INFO:
	 [Node] Setting-up "preproc.mcflirt" in "/output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/mcflirt".
250814-18:33:48,149 nipype.workflow INFO:
	 [Node] Running "mcflirt" ("nipype.interfaces.fsl.preprocess.MCFLIRT"), a CommandLine Interface with command:
mcflirt -in /output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/extract/sub-01_ses-test_task-fingerfootlips_bold_roi.nii -meanvol -out /output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/mcflirt/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii -plots
250814-18:34:55,867 nipype.workflow INFO:
	 [Node] Finished "preproc.mcflirt".
250814-18:34:55,869 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_pre" in "/output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/coreg_pre".
250814-18:34:56,48 nipype.workflow INFO:
	 [Node] Running "coreg_pre" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/mcflirt/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/bet_anat/sub-01_t1w_preproc_brain.nii.gz -out sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -dof 6
250814-18:35:05,863 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_pre".
250814-18:35:05,864 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.coreg_bbr" in "/output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/coreg_bbr".
250814-18:35:06,193 nipype.workflow INFO:
	 [Node] Running "coreg_bbr" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/mcflirt/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /data/ds000114/derivatives/fmriprep/sub-01/anat/sub-01_t1w_preproc.nii.gz -out sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -cost bbr -dof 6 -init /output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/coreg_pre/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -schedule /usr/share/fsl/5.0/etc/flirtsch/bbr.sch -wmseg /output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/threshold/sub-01_t1w_preproc_brain_pve_2_thresh.nii.gz
250814-18:36:53,994 nipype.interface INFO:
	 stdout 2025-08-14T18:36:53.994635:Applying POWELL correction
250814-18:36:53,997 nipype.interface INFO:
	 stdout 2025-08-14T18:36:53.994635:finit, fend, fextrap = 0.744375 , 0.7433 , 0.74249
250814-18:36:55,72 nipype.interface INFO:
	 stdout 2025-08-14T18:36:55.072245:fval = 0.741998
250814-18:37:01,174 nipype.interface INFO:
	 stdout 2025-08-14T18:37:01.174367:Applying POWELL correction
250814-18:37:01,176 nipype.interface INFO:
	 stdout 2025-08-14T18:37:01.174367:finit, fend, fextrap = 0.741399 , 0.740678 , 0.740355
250814-18:37:02,214 nipype.interface INFO:
	 stdout 2025-08-14T18:37:02.214092:fval = 0.740345
250814-18:37:07,231 nipype.interface INFO:
	 stdout 2025-08-14T18:37:07.231076:Applying POWELL correction
250814-18:37:07,232 nipype.interface INFO:
	 stdout 2025-08-14T18:37:07.231076:finit, fend, fextrap = 0.740266 , 0.740189 , 0.740194
250814-18:37:07,808 nipype.interface INFO:
	 stdout 2025-08-14T18:37:07.808141:fval = 0.740174
250814-18:37:11,836 nipype.interface INFO:
	 stdout 2025-08-14T18:37:11.836541:0.740167 0.999669 -0.015358 0.020650 0.000000 0.013006 0.993894 0.109574 0.000000 -0.022206 -0.109269 0.993764 0.000000 1.983636 13.404645 -7.703382 1.000000 
250814-18:37:15,416 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.coreg_bbr".
250814-18:37:15,418 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp_mean" in "/output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/applywarp_mean".
250814-18:37:15,603 nipype.workflow INFO:
	 [Node] Running "applywarp_mean" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/mcflirt/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg.nii -ref /output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/bet_anat/sub-01_t1w_preproc_brain.nii.gz -out sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -omat sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/coreg_bbr/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-18:37:17,720 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp_mean".
250814-18:37:17,721 nipype.workflow INFO:
	 [Node] Setting-up "preproc.slicetimer" in "/output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/slicetimer".
250814-18:37:17,849 nipype.workflow INFO:
	 [Node] Running "slicetimer" ("nipype.interfaces.fsl.preprocess.SliceTimer"), a CommandLine Interface with command:
slicetimer --in=/output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/mcflirt/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii --odd --out=/output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/slicetimer/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii --repeat=2.500000
250814-18:37:22,873 nipype.workflow INFO:
	 [Node] Finished "preproc.slicetimer".
250814-18:37:22,874 nipype.workflow INFO:
	 [Node] Setting-up "preproc.coregwf.applywarp" in "/output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/applywarp".
250814-18:37:23,102 nipype.workflow INFO:
	 [Node] Running "applywarp" ("nipype.interfaces.fsl.preprocess.FLIRT"), a CommandLine Interface with command:
flirt -in /output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/slicetimer/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf_st.nii -ref /output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/bet_anat/sub-01_t1w_preproc_brain.nii.gz -out sub-01_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -omat sub-01_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.mat -applyisoxfm 4.000000 -init /output/workingdir/preproc/coregwf/_subject_id_01_task_name_fingerfootlips/coreg_bbr/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -interp spline
250814-18:37:35,860 nipype.workflow INFO:
	 [Node] Finished "preproc.coregwf.applywarp".
250814-18:37:35,863 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/_fwhm_10/smooth".
250814-18:37:36,56 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-18:39:00,652 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-18:39:00,654 nipype.workflow INFO:
	 [Node] Setting-up "preproc.smooth" in "/output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/_fwhm_5/smooth".
250814-18:39:00,849 nipype.workflow INFO:
	 [Node] Running "smooth" ("nipype.interfaces.spm.preprocess.Smooth")
250814-18:40:28,988 nipype.workflow INFO:
	 [Node] Finished "preproc.smooth".
250814-18:40:28,990 nipype.workflow INFO:
	 [Node] Setting-up "preproc.art" in "/output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/art".
250814-18:40:29,235 nipype.workflow INFO:
	 [Node] Running "art" ("nipype.algorithms.rapidart.ArtifactDetect")
250814-18:40:37,34 nipype.workflow INFO:
	 [Node] Finished "preproc.art".
250814-18:40:37,35 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/_fwhm_10/datasink".
250814-18:40:37,474 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-18:40:37,482 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_01_task_name_fingerfootlips/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-01/task-fingerfootlips/sub-01_ses-test_task-fingerfootlips_bold.par
250814-18:40:37,531 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_01_task_name_fingerfootlips/art.sub-01_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-01/task-fingerfootlips/art.sub-01_ses-test_task-fingerfootlips_bold_outliers.txt
250814-18:40:37,574 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_01_task_name_fingerfootlips/plot.sub-01_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-01/task-fingerfootlips/plot.sub-01_ses-test_task-fingerfootlips_bold.svg
250814-18:40:37,624 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_01_task_name_fingerfootlips/sub-01_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-01/task-fingerfootlips/sub-01_t1w_preproc_brain.nii.gz
250814-18:40:37,683 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_01_task_name_fingerfootlips/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-01/task-fingerfootlips/sub-01_ses-test_task-fingerfootlips_bold_mean.mat
250814-18:40:37,733 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_01_task_name_fingerfootlips/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-01/task-fingerfootlips/sub-01_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-18:40:37,796 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_01_task_name_fingerfootlips/_fwhm_10/ssub-01_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-01/task-fingerfootlips/fwhm-10_ssub-01_ses-test_task-fingerfootlips_bold.nii
250814-18:40:38,147 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".
250814-18:40:38,149 nipype.workflow INFO:
	 [Node] Setting-up "preproc.datasink" in "/output/workingdir/preproc/_subject_id_01_task_name_fingerfootlips/_fwhm_5/datasink".
250814-18:40:38,583 nipype.workflow INFO:
	 [Node] Running "datasink" ("nipype.interfaces.io.DataSink")
250814-18:40:38,594 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_01_task_name_fingerfootlips/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii.par -> /output/datasink/preproc/sub-01/task-fingerfootlips/sub-01_ses-test_task-fingerfootlips_bold.par
250814-18:40:38,629 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_01_task_name_fingerfootlips/art.sub-01_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt_outliers.txt -> /output/datasink/preproc/sub-01/task-fingerfootlips/art.sub-01_ses-test_task-fingerfootlips_bold_outliers.txt
250814-18:40:38,665 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_01_task_name_fingerfootlips/plot.sub-01_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.svg -> /output/datasink/preproc/sub-01/task-fingerfootlips/plot.sub-01_ses-test_task-fingerfootlips_bold.svg
250814-18:40:38,694 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_01_task_name_fingerfootlips/sub-01_t1w_preproc_brain.nii.gz -> /output/datasink/preproc/sub-01/task-fingerfootlips/sub-01_t1w_preproc_brain.nii.gz
250814-18:40:38,730 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_01_task_name_fingerfootlips/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.mat -> /output/datasink/preproc/sub-01/task-fingerfootlips/sub-01_ses-test_task-fingerfootlips_bold_mean.mat
250814-18:40:38,756 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_01_task_name_fingerfootlips/sub-01_ses-test_task-fingerfootlips_bold_roi_mcf.nii_mean_reg_flirt.nii.gz -> /output/datasink/preproc/sub-01/task-fingerfootlips/sub-01_ses-test_task-fingerfootlips_bold_mean.nii.gz
250814-18:40:38,795 nipype.interface INFO:
	 sub: /output/datasink/preproc/_subject_id_01_task_name_fingerfootlips/_fwhm_5/ssub-01_ses-test_task-fingerfootlips_bold_roi_mcf_st_flirt.nii -> /output/datasink/preproc/sub-01/task-fingerfootlips/fwhm-5_ssub-01_ses-test_task-fingerfootlips_bold.nii
250814-18:40:38,973 nipype.workflow INFO:
	 [Node] Finished "preproc.datasink".

<networkx.classes.digraph.DiGraph at 0x7fd2c460acf8>

Inspect output

Let’s check the structure of the output folder, to see if we have everything we wanted to save.

!ls /output/datasink/preproc/sub-01

task-fingerfootlips

!tree /output/datasink/preproc/sub-01/task-fingerfootlips

/output/datasink/preproc/sub-01/task-fingerfootlips
├── art.sub-01_ses-test_task-fingerfootlips_bold_outliers.txt
├── fwhm-10_ssub-01_ses-test_task-fingerfootlips_bold.nii
├── fwhm-5_ssub-01_ses-test_task-fingerfootlips_bold.nii
├── plot.sub-01_ses-test_task-fingerfootlips_bold.svg
├── sub-01_ses-test_task-fingerfootlips_bold_mean.mat
├── sub-01_ses-test_task-fingerfootlips_bold_mean.nii.gz
├── sub-01_ses-test_task-fingerfootlips_bold.par
└── sub-01_t1w_preproc_brain.nii.gz

0 directories, 8 files

Visualize results

Let’s check the effect of the different smoothing kernels.

import nilearn
from nilearn import image, plotting
out_path = '/output/datasink/preproc/sub-01/task-fingerfootlips/'
fmri_preproc = nilearn.image.load_img(f'{out_path}/sub-01_ses-test_task-fingerfootlips_bold_mean.nii.gz')

plotting.view_img(fmri_preproc, bg_img=anat, threshold=0.1e3, 
                  cut_coords=(0,0,0), title='Anat and fmri aligned, fwhm = 0 mm')

fmri_preproc_5 = image.mean_img(nilearn.image.load_img(f'{out_path}/fwhm-5_ssub-01_ses-test_task-fingerfootlips_bold.nii'))
plotting.view_img(fmri_preproc_5, bg_img=anat, threshold=0.1e3, 
                  cut_coords=(0,0,0), title='Anat and fmri aligned, fwhm = 5 mm')

fmri_preproc_10 = image.mean_img(nilearn.image.load_img(f'{out_path}/fwhm-10_ssub-01_ses-test_task-fingerfootlips_bold.nii'))
plotting.view_img(fmri_preproc_10, bg_img=anat, threshold=0.1e3, 
                  cut_coords=(0,0,0), title='Anat and fmri aligned, fwhm = 10 mm')

Now, let’s investigate the motion parameters. How much did the subject move and turn in the scanner?

import matplotlib.pyplot as plt
%matplotlib inline

par = np.loadtxt('/output/datasink/preproc/sub-01/task-fingerfootlips/sub-01_ses-test_task-fingerfootlips_bold.par')
fig, axes = plt.subplots(2, 1, figsize=(15, 5))
axes[0].set_ylabel('rotation (radians)')
axes[0].plot(par[0:, :3])
axes[1].plot(par[0:, 3:])
axes[1].set_xlabel('time (TR)')
axes[1].set_ylabel('translation (mm)')
plt.show()

There seems to be a rather drastic motion around volume 102. Let’s check if the outliers detection algorithm was able to pick this up.

import numpy as np
outlier_ids = np.loadtxt('/output/datasink/preproc/sub-01/task-fingerfootlips/art.sub-01_ses-test_task-fingerfootlips_bold_outliers.txt')
print('Outliers were detected at volumes: %s' % outlier_ids)

# from IPython.display import SVG
SVG('/output/datasink/preproc/sub-01/task-fingerfootlips/plot.sub-01_ses-test_task-fingerfootlips_bold.svg') 

Outliers were detected at volumes: [ 59. 102.]

Alternative for motion artifacts detection ICA-based Automatic Removal Of Motion Artifact

Dataset: A test-retest fMRI dataset for motor, language and spatial attention functions

Special thanks to Michael Notter for the wonderful nipype tutorial

Example of fmriprep run

!pip install fmriprep sentry_sdk awscli

Collecting fmriprep
  Downloading fmriprep-20.0.7-py3-none-any.whl (25.3 MB)
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!rm -r ./ds000114-download

!aws s3 sync --no-sign-request s3://openneuro.org/ds000114 \
    ds000114-download/ \
    --exclude='*' \
    --include='task-fingerfootlips_bold.json' \
    --include='dataset_description.json' \
    --include='sub-01/*'

input_dir='/data'
output_dir = 'pwd'

!rm -r /output/fmriprep

!ls './ds000114-download/sub-01/' 

!ls /data/ds000114/sub-01/ses-test/func/

Example of running fmriprep

will cause an error, first, we have to create BIDS validated dataset

!fmriprep ./ds000114-download/ /output/  participant --fs-license-file ./license.txt --fs-no-reconall -w /output --participant_label 01